PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G243700.1
Common NameB456_008G243700, LOC105765189
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 24740.7 Da    PI: 4.9501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G243700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-1768115355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++  g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Gorai.008G243700.1  68 YRGIRYRS--GKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 115
                         9****976..*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-2967129IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1867125IPR016177DNA-binding domain
PROSITE profilePS5103220.29767123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2667124IPR001471AP2/ERF domain
PRINTSPR003671.1E-66879IPR001471AP2/ERF domain
PfamPF008473.7E-1168115IPR001471AP2/ERF domain
CDDcd000182.74E-1768125No hitNo description
PRINTSPR003671.1E-6105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMTDPNNPTD DHPSQPPIPS SFDHPNIQVP HPLFTHTCED LPSPCDKLPP AGKSPMASSS  60
SPGKHPMYRG IRYRSGKWVS EIREPRKTTR IWLGTYPTPE MAAAAYDVAA LALKGSEAVV  120
NFPASVASYR LPVSTSSADI RTAASAAASL KKDEMKSGIN IGTGEYHQAK DREEMSKEEY  180
VDEDALLDLP NLLVDMAQGM LVSPPRIRST PSDDSPENSD GESLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-1461128168ATERF1
2gcc_A3e-1461128168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5865429e-55JX586542.1 Gossypium hirsutum clone NBRI_GE20385 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439612.11e-167PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-53ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D2Q1401e-167A0A0D2Q140_G
STRINGVIT_16s0100g00400.t011e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-44ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]